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인용수 2
·2025
T-SCAPE: T cell immunogenicity scoring via cross-domain aided predictive engine
Jeonghyeon Kim, Nuri Jung, J.Y. Lee, Nam‐Hyuk Cho, Jinsung Noh, Chaok Seok
IF 12.5Science Advances
초록

T cell immunogenicity, the ability of peptide fragments to elicit T cell responses, is a critical determinant of the safety and efficacy of protein therapeutics and vaccines. While deep learning shows promise for in silico prediction, the scarcity of comprehensive immunogenicity data is a major challenge. We present T cell immunogenicity scoring via cross-domain aided predictive engine (T-SCAPE), a novel multidomain deep learning framework that leverages adversarial domain adaptation to integrate diverse immunologically relevant data sources, including major histocompatibility complex (MHC) presentation, peptide-MHC (pMHC) binding affinity, T cell receptor-pMHC interaction, source organism information, and T cell activation. Validated through rigorous leakage-controlled benchmarks, T-SCAPE demonstrates exceptional performance in predicting T cell activation for specific peptide-MHC pairs. It also accurately predicts the antidrug antibody-inducing potential of therapeutic antibodies without requiring MHC inputs. This success is attributed to T-SCAPE's biologically grounded and data-driven multidomain pretraining. Its consistent and robust performance highlights its potential to advance the development of safer and more effective vaccines and protein therapeutics.

키워드
ImmunogenicityIn silicoT cellMajor histocompatibility complexCellAntigenHuman leukocyte antigen
타입
article
IF / 인용수
12.5 / 2
게재 연도
2025

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