Recently, domestic small airport development plans are being promoted centering on islands, and among them, Baengnyeong Island Airport is located very close to North Korea due to its geographical characteristics. In particular, since it is located in the P-518, which is prohibited airspace, it is essential to configure the arrival/departure flight procedure route similarly to the current ship in terms of securing flight safety. Therefore, in this study, a plan for airport location and facility scale was proposed by focusing on the runway operated for the purpose of aircraft operation through consultations with the Ministry of National Defense. It was proposed to meet the standards of the Airport Facility Act as an airport dedicated to domestic flights for airside facilities such as runway length and direction, target aircraft, landing pad, apron, runway and taxiway width appropriate for the topographical characteristics of Baengnyeong Island. As a result, the flight procedure is generally established as a two-way visual flight, but the 10-way arrival/departure procedure was planned to be changed to an instrument (non-precision) according to the specificity of the region. In addition, a flight procedure was established and presented for safe and systematic operation by reflecting the changes in airport facility size (landing pad, runway end safety area, etc.) following the change in instrument flight procedure in the visual flight procedure.