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김준 연구실
충남대학교 생명과학과
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김준 연구실

충남대학교 생명과학과 김준 교수

김준 연구실은 발생유전학과 유전체학을 기반으로 생명현상의 유전적 조절 원리를 규명하고, 행동 및 발달 과정의 분자기전을 탐구하는 한편, 롱리드 시퀀싱을 활용한 암 유전체 구조변이·융합유전자 분석과 종양 미세환경 및 전이 기전 연구를 통해 질병의 분자적 이해와 정밀의학적 응용 가능성을 확장하고 있다.

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발생유전학과 유전적 조절 기전
주요 논문
5
논문 전체보기
1
article
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green
·
인용수 77
·
2023
Crosstalk between small-cell lung cancer cells and astrocytes mimics brain development to promote brain metastasis
Fangfei Qu, Siqi Cao, Wojciech Michno, Chioma J. Madubata, Griffin G. Hartmann, Alyssa Puno, Alexandros P. Drainas, Debadrita Bhattacharya, Erwin Tomasich, Myung Chang Lee, Dian Yang, Jun Kim, Maria Peiris‐Pagès, Kathryn Simpson, Caroline Dive, Matthias Preusser, Angus Toland, Christina S. Kong, Millie Das, Monte M. Winslow, Anca M. Pașca, Julien Sage
IF 19.1
Nature Cell Biology
https://doi.org/10.1038/s41556-023-01241-6
Crosstalk
Brain metastasis
Astrocyte
Biology
Neuroscience
Metastasis
Neuron
Cancer research
Cell biology
Central nervous system
2
article
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gold
·
인용수 11
·
2021
Telomeres reforged with non-telomeric sequences in mouse embryonic stem cells
Chuna Kim, Sang-Hyun Sung, Jong‐Seo Kim, Hyunji Lee, Yoonseok Jung, Sanghee Shin, Eunkyeong Kim, Jenny J. Seo, Jun Kim, Daeun Kim, Hiroyuki Niida, V. Narry Kim, Daechan Park, Junho Lee
IF 15.7
Nature Communications
Telomeres are part of a highly refined system for maintaining the stability of linear chromosomes. Most telomeres rely on simple repetitive sequences and telomerase enzymes to protect chromosomal ends; however, in some species or telomerase-defective situations, an alternative lengthening of telomeres (ALT) mechanism is used. ALT mainly utilises recombination-based replication mechanisms and the constituents of ALT-based telomeres vary depending on models. Here we show that mouse telomeres can exploit non-telomeric, unique sequences in addition to telomeric repeats. We establish that a specific subtelomeric element, the mouse template for ALT (mTALT), is used for repairing telomeric DNA damage as well as for composing portions of telomeres in ALT-dependent mouse embryonic stem cells. Epigenomic and proteomic analyses before and after ALT activation reveal a high level of non-coding mTALT transcripts despite the heterochromatic nature of mTALT-based telomeres. After ALT activation, the increased HMGN1, a non-histone chromosomal protein, contributes to the maintenance of telomere stability by regulating telomeric transcription. These findings provide a molecular basis to study the evolution of new structures in telomeres.
https://doi.org/10.1038/s41467-021-21341-x
Telomere
Embryonic stem cell
Stem cell
Biology
Cell biology
Genetics
Computational biology
Gene
3
article
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인용수 1
·
2018
Abstract 3918: Targeting the CLCF1-CNTFR signaling axis using directed evolution for lung cancer therapy
César Márquez, Jun Kim, Amato J. Giaccia, Jennifer R. Cochran, E. Alejandro Sweet‐Cordero
IF 16.6
Cancer Research
Abstract Introduction: While cancer-associated fibroblasts (CAFs) are known to promote and sustain the growth of tumors, the underlying mechanisms remain incompletely understood. Previous work in our lab identified a novel mechanism of communication in which CAFs secrete cardiotrophin-like cytokine factor 1 (CLCF1), a cytokine that binds ciliary neurotrophic factor receptor (CNTFR) on tumor cells and promotes neoplastic growth. CNTFR is a component of the tripartite receptor complex formed by CNTFR-gp130-LIFR and is capable of activating several oncogenic signaling cascades, including Jak-STAT. Here we demonstrate that targeting CNTFR represents a potentially novel strategy for treating non-small cell lung cancer (NSCLC). Results: Gene expression analyses reveal that increased CNTFR and CLCF1 levels correlate with poor patient outcomes and that CLCF1 expression is consistently higher in CAFs when compared to normal lung fibroblasts (NLFs) from the same patient. Elevated CNTFR expression was also seen in NSCLC cell lines by western blot, immunohistochemistry, and flow cytometry. Addition of recombinant CLCF1 increased the proliferation of NSCLC cell lines in culture (A549, H23, and H358), while CNTFR knockdown decreased cell proliferation and colony formation in vitro and tumor growth in A549, H23, and H2009 xenografts. CNTFR knockdown also decreased phosphorylation of STAT3 and ERK and decreased expression of several dedifferentiation markers. Therefore, CLCF1-CNTFR signaling may promote tumor growth by activating the Jak-STAT and Ras-Raf-MEK-ERK pathways, and by promoting the dedifferentiation of normal epithelial tissue. Finally, we tested a novel “ligand trap” to bind soluble CLCF1 thereby abrogating the CLCF1-CNTFR signaling axis. This ligand trap was designed using directed protein engineering to increase binding compared to the native CNTFR. In vivo treatment of cell lines and patient-derived xenografts (PDXs) led to decreased tumor growth. Currently we are testing this novel biologic in an autochthonous mouse tumor model. These results identify a pro-oncogenic role for CLCF1-CNTFR signaling in lung cancer and a potentially novel approach to therapy using a ligand decoy. Perspectives: We identify for the first time a critical role for CLCF1-CNTFR signaling in NSCLC progression. We validate this role in both a cell culture model and in PDXs, and we also demonstrate novel links between CLCF1-CNTFR and two well established oncogenic pathways. Our findings may shed light on oncogenic mechanisms in other cancer contexts and facilitate the development of novel therapeutic strategies. Citation Format: Cesar Marquez, Jun Kim, Amato Giaccia, Jennifer Cochran, Alejandro Sweet-Cordero. Targeting the CLCF1-CNTFR signaling axis using directed evolution for lung cancer therapy [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2018; 2018 Apr 14-18; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2018;78(13 Suppl):Abstract nr 3918.
https://doi.org/10.1158/1538-7445.am2018-3918
Cancer research
Gene knockdown
MAPK/ERK pathway
Cell growth
Biology
Growth factor
Cytokine
Signal transduction
Chemistry
Receptor
정부 과제
1
과제 전체보기
1
2023년 5월-2025년 2월
|59,753,000
유전체 지도 제작과 유전자동형 분석을 통한전립선 암의 유전자 융합 기작 연구
전립선암 세포주 내 융합유전자 목록 확보 및 관련 기작 규명을 통한 전립선암 특이적 표지 제시 - 연구가설: 본 지원자는 롱리드 시퀀싱의 장점을 살려, 전립선암 세포주에서 DNA 손상과 회복 이후 새롭게 형성됐을 다양한 융합유전자와 유전자동형 목록을 확보할 수 있을 것으로 확신함. 나아가 그 기능을 세포주에서 검증하고, 구조변이를 단일염기 수준에서 정밀하게...
구조변이
융합유전자
롱리드시퀀싱
전립선암