주요 논문
5
*2026년 기준 최근 6년 이내 논문에 한해 Impact Factor가 표기됩니다.
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Article
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인용수 2
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2024Adapt-cMolGPT: A Conditional Generative Pre-Trained Transformer with Adapter-Based Fine-Tuning for Target-Specific Molecular Generation
Soyoung Yoo, Junghyun Kim
IF 4.9 (2024)
International Journal of Molecular Sciences
Small-molecule drug design aims to generate compounds that target specific proteins, playing a crucial role in the early stages of drug discovery. Recently, research has emerged that utilizes the GPT model, which has achieved significant success in various fields to generate molecular compounds. However, due to the persistent challenge of small datasets in the pharmaceutical field, there has been some degradation in the performance of generating target-specific compounds. To address this issue, we propose an enhanced target-specific drug generation model, Adapt-cMolGPT, which modifies molecular representation and optimizes the fine-tuning process. In particular, we introduce a new fine-tuning method that incorporates an adapter module into a pre-trained base model and alternates weight updates by sections. We evaluated the proposed model through multiple experiments and demonstrated performance improvements compared to previous models. In the experimental results, Adapt-cMolGPT generated a greater number of novel and valid compounds compared to other models, with these generated compounds exhibiting properties similar to those of real molecular data. These results indicate that our proposed method is highly effective in designing drugs targeting specific proteins.
https://doi.org/10.3390/ijms25126641
Adapter (computing)
Computer science
Transformer
Generative model
Drug discovery
Drug target
Process (computing)
Representation (politics)
Generative grammar
Machine learning
2
Article
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인용수 2
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2024Edge Convolution Graph Neural Network Assisted Power Allocation for Wireless IoT Networks
Jihyung Kim, Yeji Cho, Junghyun Kim
IF 3.6 (2024)
IEEE Access
We propose a novel power control technique called PC-ECGNN, which uses edge convolution to optimize power allocation in wireless IoT networks. PC-ECGNN leverages interference link distances as edge features and desired link channel gains as initial vertex features, iteratively updating vertex features based on neighbors and edge features. PC-ECGNN is the first technique to incorporate edge convolution into power control and has been customized for the considered scenario, optimizing the neural network structure to provide fast convergence and high performance simultaneously. Experimental results show that PC-ECGNN outperformed the state-of-the-art PC-MPGNN, achieving a 4% increase in average spectral efficiency and a 4dBm reduction in average transmit power compared to PC-MPGNN. Furthermore, our technique demonstrates advantages over existing methods in dynamic environmental changes. The proposed model, trained in a fixed environment, showed minimal performance degradation across various test environments different from the training setting, outperforming traditional models trained in individual environments. When applying meta-learning, the proposed model achieved better performance in each test environment after additional fine-tuning with only 1% of the pre-training epochs, compared to models trained with the full number of epochs in each individual test environment.
https://doi.org/10.1109/access.2024.3457805
Computer science
Wireless network
Convolution (computer science)
Graph
Artificial neural network
Computer network
Wireless
Enhanced Data Rates for GSM Evolution
Distributed computing
Theoretical computer science
3
Article
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인용수 4
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2023Deep Learning for Identifying Promising Drug Candidates in Drug–Phospholipid Complexes
Soyoung Yoo, Hanbyul Lee, Junghyun Kim
IF 4.2 (2023)
Molecules
Drug-phospholipid complexing is a promising formulation technology for improving the low bioavailability of active pharmaceutical ingredients (APIs). However, identifying whether phospholipid and candidate drug can form a complex through in vitro tests can be costly and time-consuming due to the physicochemical properties and experimental environment. In a previous study, the authors developed seven machine learning models to predict drug-phospholipid complex formation, and the lightGBM model demonstrated the best performance. However, the previous study was unable to sufficiently address the degradation of test performance caused by the small size of the training data with class imbalance, and it had the limitation of considering only machine learning techniques. To overcome these limitations, we propose a new deep learning-based prediction model that employs variational autoencoder (VAE) and principal component analysis (PCA) techniques to improve prediction performance. The model uses a multi-layer one-dimensional convolutional neural network (CNN) with a skip connection to effectively capture the complex relationship between drugs and lipid molecules. The computer simulation results demonstrate that our proposed model performs better than the previous model in all performance metrics.
https://doi.org/10.3390/molecules28124821
Artificial intelligence
Computer science
Autoencoder
Drug
Machine learning
Deep learning
Drug discovery
Principal component analysis
Phospholipid
Chemistry
4
Article
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인용수 12
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2022Drug Properties Prediction Based on Deep Learning
Soyoung Yoo, Junghyun Kim, Guang J. Choi
IF 5.4 (2022)
Pharmaceutics
In recent research on the formulation prediction of oral dissolving drugs, deep learning models with significantly improved performance compared to machine learning models were proposed. However, the performance degradation due to limitations of an imbalanced dataset with a small size and inefficient neural network structure has still not been resolved. Therefore, we propose new deep learning-based prediction models that maximize the prediction performance for disintegration time of oral fast disintegrating films (OFDF) and cumulative dissolution profiles of sustained-release matrix tablets (SRMT). In the case of OFDF, we use principal component analysis (PCA) to reduce the dimensionality of the dataset, thereby improving the prediction performance and reducing the training time. In the case of SRMT, the Wasserstein generative adversarial network (WGAN), a neural network-based generative model, is used to overcome the limitation of performance improvement due to the lack of experimental data. To the best of our knowledge, this is the first work that utilizes WGAN for pharmaceutical formulation prediction. Experimental results show that the proposed methods have superior performance than the existing methods for all the performance metrics considered.
https://doi.org/10.3390/pharmaceutics14020467
Computer science
Artificial intelligence
Machine learning
Artificial neural network
Principal component analysis
Curse of dimensionality
Deep learning
Generative grammar
Generative adversarial network
Predictive modelling
5
Article
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인용수 16
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2022Deep Learning-Based Prediction of Physical Stability considering Class Imbalance for Amorphous Solid Dispersions
Hanbyul Lee, Junghyun Kim, Suyeon Kim, Jimin Yoo, Guang J. Choi, Young-Seob Jeong
IF 3 (2022)
Journal of Chemistry
This research is aimed at predicting the physical stability for amorphous solid dispersion by utilizing deep learning methods. We propose a prediction model that effectively learns from a small dataset that is imbalanced in terms of class. In order to overcome the imbalance problem, our model performs a hybrid sampling which combines synthetic minority oversampling technique (SMOTE) algorithm with edited nearest neighbor (ENN) algorithm and reduces the dimensionality of the dataset using principal component analysis (PCA) algorithm during data preprocessing. After the preprocessing, it performs the learning process using a carefully designed neural network of simple but effective structure. Experimental results show that the proposed model has faster training convergence speed and better test performance compared to the existing DNN model. Furthermore, it significantly reduces the computational complexity of both training and test processes.
https://doi.org/10.1155/2022/4148443
Oversampling
Preprocessor
Stability (learning theory)
Artificial intelligence
Principal component analysis
Curse of dimensionality
Convergence (economics)
Computer science
Process (computing)
Machine learning