Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species
Seungill Kim, Minkyu Park, Seon‐In Yeom, Yong Min Kim, Je Min Lee, Hyun Ah Lee, Eun–Young Seo, Jaeyoung Choi, Kyeongchae Cheong, Ki Tae Kim, Kyongyong Jung, Gir-Won Lee, Sang-Keun Oh, Chungyun Bae, Saet-Byul Kim, Hye Young Lee, Shin-Young Kim, Myung‐Shin Kim, Byoung‐Cheorl Kang, Yeong Deuk Jo, Hee-Bum Yang, Hee-Jin Jeong, Won-Hee Kang, Jin-Kyung Kwon, Chanseok Shin, Jae Yun Lim, June Hyun Park, Jin Hoe Huh, June‐Sik Kim, Byung-Dong Kim, Oded Cohen, Ilan Paran, Mi Chung Suh, Saet Buyl Lee, Yeon-Ki Kim, Younhee Shin, Seung-Jae Noh, Junhyung Park, Young Sam Seo, Suk‐Yoon Kwon, Hyun A Kim, Jeong Mee Park, Hyun‐Jin Kim, Sang-Bong Choi, Paul W. Bosland, Gregory Reeves, Sung-Hwan Jo, Bong-Woo Lee, Hyung‐Taeg Cho, Hee-Seung Choi, Min-Soo Lee, Yeisoo Yu, Yang Do Choi, Beom-Seok Park, Allen Van Deynze, Hamid Ashrafi, Theresa Hill, Woo Taek Kim, Hyun‐Sook Pai, Heekyung Ahn, Inhwa Yeam, James J. Giovannoni, Jocelyn K. C. Rose, Iben Sørensen, Sang-Jik Lee, Ryan W. Kim, Ik‐Young Choi, Beom-Soon Choi, Jong-Sung Lim, Yong‐Hwan Lee, Doil Choi
Hot pepper (Capsicum annuum), one of the oldest domesticated crops in the Americas, is the most widely grown spice crop in the world. We report whole-genome sequencing and assembly of the hot pepper (Mexican landrace of Capsicum annuum cv. CM334) at 186.6× coverage. We also report resequencing of two cultivated peppers and de novo sequencing of the wild species Capsicum chinense. The genome size of the hot pepper was approximately fourfold larger than that of its close relative tomato, and the genome showed an accumulation of Gypsy and Caulimoviridae family elements. Integrative genomic and transcriptomic analyses suggested that change in gene expression and neofunctionalization of capsaicin synthase have shaped capsaicinoid biosynthesis. We found differential molecular patterns of ripening regulators and ethylene synthesis in hot pepper and tomato. The reference genome will serve as a platform for improving the nutritional and medicinal values of Capsicum species.