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19

11

MS1-Level Proteome Quantification Platform Allowing Maximally Increased Multiplexity for SILAC and In Vitro Chemical Labeling
Choi, Y[Choi, Yeon], Jeong, K[Jeong, Kyowon], Shin, S[Shin, Sanghee], Lee, JW[Lee, Joon Won], Lee, YS[Lee, Young-Suk], Kim, S[Kim, Sangtae], Kim, SA[Kim, Sun Ah], Jung, J[Jung, Jaehun], Kim, KP[Kim, Kwang Pyo], Kim, VN[Kim, V. Narry], Kim, JS[Kim, Jong-Seo]
ANALYTICAL CHEMISTRY, 202004

12

A Computational Framework for Genome-wide Characterization of the Human Disease Landscape
Lee, YS[Lee, Young-suk], Krishnan, A[Krishnan, Arjun], Oughtred, R[Oughtred, Rose], Rust, J[Rust, Jennifer], Chang, CS[Chang, Christie S.], Ryu, J[Ryu, Joseph], Kristensen, VN[Kristensen, Ves, Dolinski, K[Dolinski, Kara], Theesfeld, CL[Theesfeld, Chand, Troyanskaya, OG[Troyanskaya, O
CELL SYSTEMS, 201902

13

Molecular Basis for the Single-Nucleotide Precision of Primary microRNA Processing
Kwon, SC[Kwon, S. Chul], Baek, SC[Baek, S. Chan], Choi, YG[Choi, Yeon-Gil], Yang, J[Yang, Jihye], Woo, JS[Woo, Jae-Sung], Kim, VN[Kim, V. Narry], Lee, YS[Lee, Young-suk]
MOLECULAR CELL, 201902

14

Interpretation of an individual functional genomics experiment guided by massive public data
Lee, YS[Lee, Young-suk], Wong, AK[Wong, Aaron K.], Tadych, A[Tadych, Alicja], Hartmann, BM[Hartmann, Boris M, Park, CY[Park, Christopher Y.], DeJesus, VA[DeJesus, Veronica, Ramos, I[Ramos, Irene], Zaslavsky, E[Zaslavsky, Elena], Sealfon, SC[Sealfon, Stuart C., Troyanskaya, OG[Troyanskaya, O
NATURE METHODS, 201812

15

Mixed tailing by TENT4A and TENT4B shields mRNA from rapid deadenylation
Lim, J[Lim, Jaechul], Kim, D[Kim, Dongwan], Lee, YS[Lee, Young-suk], Ha, M[Ha, Minju], Lee, M[Lee, Mihye], Yeo, J[Yeo, Jinah], Chang, H[Chang, Hyeshik], Song, J[Song, Jaewon], Ahn, K[Ahn, Kwangseog], Kim, VN[Kim, V. Narry]
SCIENCE, 201808

16

IFN gamma-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment
Nirschl, CJ[Nirschl, Christoph, Suarez-Farinas, M[Suarez-Farin, Izar, B[Izar, Benjamin], Prakadan, S[Prakadan, Sanjay], Dannenfelser, R[Dannenfelser,, Tirosh, I[Tirosh, Itay], Liu, Y[Liu, Yong], Zhu, Q[Zhu, Qian], Devi, KSP[Devi, K. Sanjana P.], Carroll, SL[Carroll, Shaina L., Chau, D[Chau, David], Rezaee, M[Rezaee, Melika], Kim, TG[Kim, Tae-Gyun], Huang, RQ[Huang, Ruiqi], Fuentes-Duculan, J[Fuentes-Duc, Song-Zhao, GX[Song-Zhao, Georg, Gulati, N[Gulati, Nicholas], Lowes, MA[Lowes, Michelle A.], King, SL[King, Sandra L.], Quintana, FJ[Quintana, Francis, Lee, YS[Lee, Young-suk], Krueger, JG[Krueger, James G.], Sarin, KY[Sarin, Kavita Y.], Yoon, CH[Yoon, Charles H.], Garraway, L[Garraway, Levi], Regev, A[Regev, Aviv], Shalek, AK[Shalek, Alex K.], Troyanskaya, O[Troyanskaya, Ol, Anandasabapathy, N[Anandasabap
CELL, 201706

17

Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms
Park, CY[Park, Christopher Y.], Krishnan, A[Krishnan, Arjun], Zhu, Q[Zhu, Qian], Wong, AK[Wong, Aaron K.], Lee, YS[Lee, Young-Suk], Troyanskaya, OG[Troyanskaya, O
BIOINFORMATICS, 201504

18

Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies
Lee, YS[Lee, Young-suk], Krishnan, A[Krishnan, Arjun], Zhu, Q[Zhu, Qian], Troyanskaya, OG[Troyanskaya, O
BIOINFORMATICS, 201312

19

Defining cell-type specificity at the transcriptional level in human disease
Ju, WJ[Ju, Wenjun], Greene, CS[Greene, Casey S.], Eichinger, F[Eichinger, Felix], Nair, V[Nair, Viji], Hodgin, JB[Hodgin, Jeffrey B.], Bitzer, M[Bitzer, Markus], Lee, YS[Lee, Young-suk], Zhu, Q[Zhu, Qian], Kehata, M[Kehata, Masami], Li, M[Li, Min], Jiang, S[Jiang, Song], Rastaldi, MP[Rastaldi, Maria P, Cohen, CD[Cohen, Clemens D.], Troyanskaya, OG[Troyanskaya, O, Kretzler, M[Kretzler, Matthias
GENOME RESEARCH, 201311