주요 논문
5
*2026년 기준 최근 7년 이내 논문에 한해 Impact Factor가 표기됩니다.
1
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인용수 10
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2025Automated Construction of a Yeast-Based Multigene Library via Homologous Recombination in a Biofoundry Workflow
Min-Jun Seong, Y YOON, Kil Koang Kwon, Haseong Kim, Seung‐Goo Lee, Jonghyeok Shin, Dae‐Hee Lee
IF 4.5 (2025)
ACS Synthetic Biology
Efficiently building metabolic pathways via multigene assembly has long been constrained by the limitations of traditional cloning techniques, necessitating a breakthrough in gene assembly methods. Notably, various in vitro gene assembly methods have been developed to simplify the construction of an expression-tunable library. However, in vitro gene assembly requires a tedious multistep construction process, making it time-consuming and labor-intensive. Therefore, in this study, we developed an automated one-step multigene assembly method for constructing an expression-tunable library based on in vivo homologous recombination. We optimized the shuttle vector for in vivo homologous recombination to improve the assembly efficiency. We also scaled down the whole assembly method for a high-throughput gene assembly. Finally, the developed method demonstrated the construction of the expression-tunable multigene library in the biofoundry. Therefore, this study offers a versatile strategy for parallel and high-throughput genetic engineering in synthetic biology.
https://doi.org/10.1021/acssynbio.4c00812
Homologous recombination
Workflow
Yeast
Recombination
Computational biology
Genetics
Biology
Computer science
Gene
Database
2
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인용수 24
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2024Compositional and temporal division of labor modulates mixed sugar fermentation by an engineered yeast consortium
Jonghyeok Shin, Siqi Liao, Nurzhan Kuanyshev, Yongping Xin, Chan-Woo Kim, Ting Lu, Yong‐Su Jin
IF 15.7 (2024)
Nature Communications
Synthetic microbial communities have emerged as an attractive route for chemical bioprocessing. They are argued to be superior to single strains through microbial division of labor (DOL), but the exact mechanism by which DOL confers advantages remains unclear. Here, we utilize a synthetic Saccharomyces cerevisiae consortium along with mathematical modeling to achieve tunable mixed sugar fermentation to overcome the limitations of single-strain fermentation. The consortium involves two strains with each specializing in glucose or xylose utilization for ethanol production. By controlling initial community composition, DOL allows fine tuning of fermentation dynamics and product generation. By altering inoculation delay, DOL provides additional programmability to parallelly regulate fermentation characteristics and product yield. Mathematical models capture observed experimental findings and further offer guidance for subsequent fermentation optimization. This study demonstrates the functional potential of DOL in bioprocessing and provides insight into the rational design of engineered ecosystems for various applications.
https://doi.org/10.1038/s41467-024-45011-w
Yeast
Fermentation
Sugar
Division (mathematics)
Saccharomyces cerevisiae
Genetically engineered
Biotechnology
Biology
Food science
Biochemistry
Mathematics
3
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인용수 3
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2022Directed Evolution of Soluble α-1,2-Fucosyltransferase Using Kanamycin Resistance Protein as a Phenotypic Reporter for Efficient Production of 2'-Fucosyllactose
Shin Jonghyeok, Kim Seungjoo, Park Wonbeom, Jin Kyoung Chan, 김선기, 권대혁
IF 0.111 (KCI 2022)
Journal of Microbiology and Biotechnology
2'-Fucosyllactose (2'-FL), the most abundant fucosylated oligosaccharide in human milk, has multiple beneficial effects on human health. However, its biosynthesis by metabolically engineered Escherichia coli is often hampered owing to the insolubility and instability of α-1,2-fucosyltransferase (the rate-limiting enzyme). In this study, we aimed to enhance 2'-FL production by increasing the expression of soluble α-1,2-fucosyltransferase from Helicobacter pylori (FucT2). Because structural information regarding FucT2 has not been unveiled, we decided to improve the expression of soluble FucT2 in E. coli via directed evolution using a protein solubility biosensor that links protein solubility to antimicrobial resistance. For such a system to be viable, the activity of kanamycin resistance protein (KanR ) should be dependent on FucT2 solubility. KanR was fused to the C-terminus of mutant libraries of FucT2, which were generated using a combination of error-prone PCR and DNA shuffling. Notably, one round of the directed evolution process, which consisted of mutant library generation and selection based on kanamycin resistance, resulted in a significant increase in the expression level of soluble FucT2. As a result, a batch fermentation with the ΔL M15 pBCGW strain, expressing the FucT2 mutant (F#1–5) isolated from the first round of the directed evolution process, resulted in the production of 0.31 g/l 2'-FL with a yield of 0.22 g 2'-FL/g lactose, showing 1.72- and 1.51-fold increase in the titer and yield, respectively, compared to those of the control strain. The simple and powerful method developed in this study could be applied to enhance the solubility of other unstable enzymes.
https://doi.org/10.4014/jmb.2209.09018
2′-fucosyllactose
α-1
2-fucosyltransferase
directed evolution
solubility biosensor
kanamycin resistance
Escherichia coli
4
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인용수 13
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2021Enhancing acid tolerance of Escherichia coli via viroporin-mediated export of protons and its application for efficient whole-cell biotransformation
Jonghyeok Shin, Yong‐Su Jin, Yong‐Cheol Park, Jin‐Byung Park, Young-Oh Lee, Sun-Ki Kim, Dae‐Hyuk Kweon
IF 8.829 (2021)
Metabolic Engineering
https://doi.org/10.1016/j.ymben.2021.07.007
Escherichia coli
Biotransformation
Biochemistry
Fermentation
Cytosol
Heterologous
Heterologous expression
Amino acid
Intracellular
Chemistry
Bacteria
Biology
Recombinant DNA
Enzyme
Gene
5
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인용수 13
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2020Development of fluorescent Escherichia coli for a whole-cell sensor of 2ʹ-fucosyllactose
Jonghyeok Shin, Myungseo Park, Chakhee Kim, Hooyeon Kim, Yunjeong Park, Choongjin Ban, Jong-Won Yoon, Chul-Soo Shin, Jae‐Won Lee, Yong‐Su Jin, Yong‐Cheol Park, Won‐Ki Min, Dae‐Hyuk Kweon
IF 4.379 (2020)
Scientific Reports
2'-Fucosyllactose (2'-FL), a major component of fucosylated human milk oligosaccharides, is beneficial to human health in various ways like prebiotic effect, protection from pathogens, anti-inflammatory activity and reduction of the risk of neurodegeneration. Here, a whole-cell fluorescence biosensor for 2'-FL was developed. Escherichia coli (E. coli) was engineered to catalyse the cleavage of 2'-FL into L-fucose and lactose by constitutively expressing α-L-fucosidase. Escherichia coli ∆L YA, in which lacZ is deleted and lacY is retained, was employed to disable lactose consumption. E. coli ∆L YA constitutively co-expressing α-L-fucosidase and a red fluorescence protein (RFP) exhibited increased fluorescence intensity in media containing 2'-FL. However, the presence of 50 g/L lactose reduced the RFP intensity due to lactose-induced cytotoxicity. Preadaptation of bacterial strains to fucose alleviated growth hindrance by lactose and partially recovered the fluorescence intensity. The fluorescence intensity of the cell was linearly proportional to 1-5 g/L 2'-FL. The whole-cell sensor will be versatile in developing a 2'-FL detection system.
https://doi.org/10.1038/s41598-020-67359-x
Escherichia coli
Fucose
Lactose
Fluorescence
Galactose
Chemistry
Biochemistry
Molecular biology
Microbiology
Biology
Gene