기본 정보
연구 분야
프로젝트
발행물
구성원
논문
주요 논문
3
1
article
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gold
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인용수 2
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2025
Development of an automated phenotyping platform and identification of a novel QTL for drought tolerance in soybean
Hakyung Kwon, Suk‐Ha Lee, Moon Young Kim, Jungmin Ha
IF 6.4
Plant Phenomics
Deep understanding of slow-wilting is essential for developing drought-tolerant crops. Existing approaches to measure transpiration rates are difficult to apply to large populations due to their high cost and low throughput. To overcome these challenges, we developed a high-throughput phenotyping system that integrates a load cell sensor and an Arduino-based microcontroller device. The system tracked the transpiration rate in real time by measuring changes in the pot weight in 224 recombinant inbred lines of Taekwangkong (fast-wilting) x SS2-2 (slow-wilting) under water-restricted conditions. Among five transpiration features we determined, stress recognition time point (SRTP) and decrease in transpiration rate by stress (DTrs) are informative parameters, that are interconnected and independently affect slow-wilting as well. Quantitative trait loci (QTL) for SRTP and DTrs were identified at the same location as the major QTL for slow wilting, <i>qSW_Gm10</i>, identified in the previous study. Notably, we found a novel major QTL for DTrs, <i>qDTrs_Gm04</i>, with a LOD value of 42 and PVE of 47 ​%. As a candidate gene for <i>qDTrs_Gm04</i>, <i>GmWRKY58</i> was selected with differential expression between the parental lines under drought conditions as well as upstream sequence variation. Our high-throughput system is of help not only to biological research but breeding programs of drought-tolerant lines.
https://doi.org/10.1016/j.plaphe.2025.100102
Quantitative trait locus
Transpiration
Drought tolerance
Inbred strain
Identification (biology)
Trait
Candidate gene
Gene
2
article
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gold
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인용수 5
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2025
Identification of genetic factors influencing flavonoid biosynthesis through pooled transcriptome analysis in mungbean sprouts
Yeonghun Cho, Hakyung Kwon, Byeong Cheol Kim, Donghwan Shim, Jungmin Ha
IF 4.8
Frontiers in Plant Science
These results provide information on the common genetic factors involved in the production of secondary metabolites, which can improve the nutritional value of mungbeans and contribute to the development of elite mungbean cultivars.
https://doi.org/10.3389/fpls.2025.1540674
Secondary metabolite
Transcriptome
Biology
Chlorogenic acid
Gallic acid
Flavonoid
Biochemistry
Catechin
Food science
Botany
3
article
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gold
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인용수 7
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2023
Enhanced stability of the SARS CoV-2 spike glycoprotein following modification of an alanine cavity in the protein core
Pantelis Poumbourios, Christine Langer, Irene Boo, Tasnim Zakir, Anouschka Akerman, Vanessa Milogiannakis, Anupriya Aggarwal, Bronte A. Johnstone, Jungmin Ha, Fasséli Coulibaly, Stuart Turville, Heidi E. Drummer
IF 4.9
PLoS Pathogens
The spike (S) glycoprotein of SARS CoV-2 is the target of neutralizing antibodies (NAbs) that are crucial for vaccine effectiveness. The S1 subunit binds ACE2 while the S2 subunit mediates virus-cell membrane fusion. S2 is a class I fusion glycoprotein subunit and contains a central coiled coil that acts as a scaffold for the conformational changes associated with fusion function. The coiled coil of S2 is unusual in that the 3-4 repeat of inward-facing positions are mostly occupied by polar residues that mediate few inter-helical contacts in the prefusion trimer. We examined how insertion of bulkier hydrophobic residues (Val, Leu, Ile, Phe) to fill a cavity next to Ala1016 and Ala1020 in the 3-4 repeat affects the stability and antigenicity of S trimers. Substitution of Ala1016 with bulkier hydrophobic residues in the context of a prefusion-stabilized S trimer, S2P-FHA, was associated with increased thermal stability. S glycoprotein membrane fusion function was retained with Ala1016/Ala1020 cavity-filling mutations associated with improved recombinant S2P-FHA thermostability, however 2 mutants, A1016L and A1016V/A1020I, lacked ability to mediate entry of S-HIV-1 pseudoparticles into 293-ACE2 cells. When assessed as immunogens, two thermostable S2P-FHA mutants derived from the ancestral isolate, A1016L (16L) and A1016V/A1020I (VI) elicited neutralizing antibody with 50%-inhibitory dilutions (ID50s) in the range 2,700-5,110 for ancestral and Delta-derived viruses, and 210-1,744 for Omicron BA.1. The antigens elicited antibody specificities directed to the receptor-binding domain (RBD), N-terminal domain (NTD), fusion peptide and stem region of S2. The VI mutation enabled the production of intrinsically stable Omicron BA.1 and Omicron BA.4/5 S2P-FHA-like ectodomain oligomers in the absence of an external trimerization motif (T4 foldon), thus representing an alternative approach for stabilizing oligomeric S glycoprotein vaccines.
https://doi.org/10.1371/journal.ppat.1010981
Glycoprotein
Lipid bilayer fusion
Protein subunit
Mutant
Coiled coil
Heptad repeat
Hemagglutinin (influenza)
Alanine
Trimer
Neutralizing antibody