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127

1

GEM-Finder: dissecting GWAS variants via long-range interacting cis-regulatory elements with differentiation-specific genes
Park G*, Lee A*, Jung I#
medRxiv. RECOMB2025, 2025

2

SCHYENA: FOUNDATION MODEL FOR FULL-LENGTH SINGLE-CELL RNA-SEQ ANALYSIS IN BRAIN
Oh G, Choi B*, Jung I#, Ye JC
arXiv [Preprint], 2023

3

Type I interferon signature and allograft inflammatory factor-1 contribute to refractoriness to TNF inhibition in ankylosing spondylitis
Song W*, Lee E*, Park S*, Choi B, Kim M, Choi S, Kim J, Kim S, Kim J, Shin E, Jung I#, Lee J#, Lee E#, and the Single-Cell Atlas of Immune Diseases Consortium
Nature Communications, 2025

4

Inhibiting EZH2 complements steroid effects in Duchenne muscular dystrophy
Jeon E*, Kwak Y, Kang H, Kim H, Jin S, Park S, Kim R, Ko D, Won J, Cho A, Jung I, Lee C, Park J, Kim H, Chae J#, Choi M#
Science Advances, 2025

5

Single-molecule analysis reveals that IPMK enhances the DNA-binding activity of the transcription factor SRF
Ahn H*, Yu J*, Ryu K*, Ryu J, Kim S, Park J, Kim J, Jung I, An H, Hong S, Kim E, Park K, Ahn M, Min S, Jung I, Lee D, Lee T, Byun Y, Song J, Kim J, Cho W, Lee G#, Kim S#
Nucleic Acids Research, 2025

6

A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data
Chen S, Wang J*, Jung I, Qui Z, Gao X#, Li Y#
Genome Research, 2024

7

Prion-like domain mediated phase separation of ARID1A promotes oncogenic potential of Ewing’s sarcoma
Kim Y*, Joo J*, Lee H, Kim C, Park J, Yu Y, Kim C, Lee D, Cha J, Kwon H, Hanssen K, Grunewald T, Choi M, Han I, Bae S, Jung I#, Shin Y#, Baek S#
Nature Communications, 2024

8

Ruxolitinib Improves Immune‑Dysregulation Features but not Epigenetic Abnormality in a Patient with STAT1 GOF
Koh J*, Kim S*, Son S, Park H, Kim K, Min S, Lee H, Jhun B, Kang E, Jung I, Kang J, Kim Y, Shin E#
Journal of Clinical Immunology, 2024

9

Spatial and clonality-resolved 3D cancer genome alterations reveal enhancer-hijacking as a potential prognostic marker for colorectal cancer
Kim K*, Kim M*, Lee A*, Song SH*, Kang JK, Eom J, Kang GH, Bae JM, Min S, Kim Y, Lim Y, Kim HS, Kim YJ, Kim TY#, Jung I#
Cell Reports, 2023

10

A virtual memory CD8+ T cell-originated subset causes alopecia areata through innate-like cytotoxicity
Seok J*, Cho S*, Lee J, Choi Y, Kim SY, Lee S, Kim SH, Jeong S, Jeon M, Lee H, Kim A. R, Choi B, Ha S, Jung I, Yoon K, Park J, Kim JH, Kim BJ, Shin E#, Park S#
Nature Immunology, 2023